I think it's a gift. Love it all the way through, love the ways it plays with the expectations that Twin Peaks set up for the viewer in the same way that Twin Peaks was already playing with (and sometimes playing straight!) expectations set up by the soaps of its era. Is some of the cosmology goofy? Sure, but I truly do not care. It's such an excellent example of tricking companies into letting you make cool shit with their money. Some of those episodes are among the best episodes of television, period.
