Here it is: the updated list. Quite a few shakeups happened, mostly because I put my top 25 into a bias sorter and decided to not move around the results too much. What it spat back out may have surprised me a little, mostly because Live A Live and Legend of Mana were knocked out of #2 and #3. It only sits right with me because what they swapped with are SaGa 1, Mega Man X2, and Link's Awakening. Honestly, you could switch the order of those in the future again and it would still make sense because of how much all those games mean to me.
The big thing is that ZeroRanger jumped up all the way to #25, and Void Stranger fell into the top of the list like a meteor. I put a stupid amount of thought over the months over where it would go, and as time went on it was only higher. I don't think anything can dethrone SaGa Frontier as it's just the perfect game for me that I love dearly, so the fact that it's at #2 speaks volumes. It deserves it, though...that's how much I love that game.
As always, don't put too much thought into the actual order of things. It changes every six months and is just based on my mood at the time. Plus it's impossible to actually rank 100 games like this, it's just a silly & fun exercise to do every six months to see what changes.