Nobody could come to a concise answer on any of the threads I could find covering the issues present in DS9 and VOY, so I decided to make a new one with very clear goals, asking for the best method to achieve them. "I want to produce a 480p output that intelligently and accurately switches between 30p and 24p for the correct respective moments."
The first response was a guy telling me to deinterlace everything to 120fps and to only watch it on a 120Hz display because 60Hz displays don't divide 24 evenly.